HL_8T3D_079

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

8T3D|1|B5|C|191, 8T3D|1|B5|U|192, 8T3D|1|B5|U|193, 8T3D|1|B5|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3D|1|B5|C|186
8T3D|1|B5|G|187
8T3D|1|B5|A|188
8T3D|1|B5|C|189
8T3D|1|B5|C|190
8T3D|1|B5|C|191
8T3D|1|B5|U|192
8T3D|1|B5|U|193
8T3D|1|B5|U|194
8T3D|1|B5|G|195
8T3D|1|B5|G|196
8T3D|1|B5|A|197
8T3D|1|B5|A|198
8T3D|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A