HL_8T3D_083

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

8T3D|1|B5|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_083 not in the Motif Atlas

Homologous match to HL_8C3A_199

Geometric discrepancy: 0.0934

The information below is about HL_8C3A_199

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8T3D|1|B5|G|330
8T3D|1|B5|A|331
8T3D|1|B5|U|332
8T3D|1|B5|A|333
8T3D|1|B5|G|334
8T3D|1|B5|U|335
8T3D|1|B5|G|336
8T3D|1|B5|G|337
8T3D|1|B5|C|338

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A

Chain BL

40S ribosomal protein S11-A