HL_8T3D_100
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GAC(B8N)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 8T3D|1|B5|A|1196
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3D_100 not in the Motif Atlas
- Homologous match to HL_8C3A_217
- Geometric discrepancy: 0.1496
- The information below is about HL_8C3A_217
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8T3D|1|B5|G|1188
8T3D|1|B5|A|1189
8T3D|1|B5|C|1190
8T3D|1|B5|B8N|1191
8T3D|1|B5|C|1192
8T3D|1|B5|A|1193
8T3D|1|B5|A|1194
8T3D|1|B5|C|1195
8T3D|1|B5|A|1196
8T3D|1|B5|C|1197
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
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