HL_8T3D_102

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GAGUGAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_102 not in the Motif Atlas

Geometric match to HL_7QR8_003

Geometric discrepancy: 0.2862

The information below is about HL_7QR8_003

Detailed Annotation

GNRA with extra tWH

Broad Annotation

GNRA with extra tWH

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8T3D|1|B5|G|1295
8T3D|1|B5|A|1296
8T3D|1|B5|G|1297
8T3D|1|B5|U|1298
8T3D|1|B5|G|1299
8T3D|1|B5|A|1300
8T3D|1|B5|U|1301
8T3D|1|B5|U|1302

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BA

40S ribosomal protein S0-A

Chain BC

RPS2 isoform 1

Chain BV

40S ribosomal protein S21-A