3D structure

PDB id
8T3D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.95 Å

Loop

Sequence
CUUAAUUG
Length
8 nucleotides
Bulged bases
8T3D|1|B5|U|1314
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T3D_103 not in the Motif Atlas
Homologous match to HL_8C3A_220
Geometric discrepancy: 0.099
The information below is about HL_8C3A_220
Detailed Annotation
T-loop related
Broad Annotation
T-loop
Motif group
HL_77436.3
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
22

Unit IDs

8T3D|1|B5|C|1309
8T3D|1|B5|U|1310
8T3D|1|B5|U|1311
8T3D|1|B5|A|1312
8T3D|1|B5|A|1313
8T3D|1|B5|U|1314
8T3D|1|B5|U|1315
8T3D|1|B5|G|1316

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BR
40S ribosomal protein S17-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1148 s