HL_8T3D_112

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GCAGCCCC

Length

8 nucleotides

Bulged bases

8T3D|1|EC|C|6863, 8T3D|1|EC|A|6864, 8T3D|1|EC|G|6865

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_112 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3988

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8T3D|1|EC|G|6862
8T3D|1|EC|C|6863
8T3D|1|EC|A|6864
8T3D|1|EC|G|6865
8T3D|1|EC|C|6866
8T3D|1|EC|C|6867
8T3D|1|EC|C|6868
8T3D|1|EC|C|6869

Current chains

Chain EC

TSV IRES

Nearby chains

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain BF

Rps5p

Chain BZ

RPS25A isoform 1