HL_8T3E_028

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

8T3E|1|A1|G|1349, 8T3E|1|A1|A|1350, 8T3E|1|A1|U|1353, 8T3E|1|A1|G|1354, 8T3E|1|A1|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3E|1|A1|U|1347
8T3E|1|A1|U|1348
8T3E|1|A1|G|1349
8T3E|1|A1|A|1350
8T3E|1|A1|U|1351
8T3E|1|A1|A|1352
8T3E|1|A1|U|1353
8T3E|1|A1|G|1354
8T3E|1|A1|A|1355
8T3E|1|A1|U|1356
8T3E|1|A1|G|1357

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

RPL4A isoform 1

Chain AE

60S ribosomal protein L6-A

Chain AQ

60S ribosomal protein L18-A

Chain Ae

RPL32 isoform 1