HL_8T3E_052

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

8T3E|1|A1|U|2571, 8T3E|1|A1|C|2572

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3E_052 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.0684

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8T3E|1|A1|C|2568
8T3E|1|A1|A|2569
8T3E|1|A1|U|2570
8T3E|1|A1|U|2571
8T3E|1|A1|C|2572
8T3E|1|A1|G|2573

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AZ

60S ribosomal protein L27-A