HL_8T3E_054

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

U(UR3)AAACGAUAACG

Length

13 nucleotides

Bulged bases

8T3E|1|A1|A|2637, 8T3E|1|A1|C|2644

QA status

Modified nucleotides: UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3E_054 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.1035

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8T3E|1|A1|U|2633
8T3E|1|A1|UR3|2634
8T3E|1|A1|A|2635
8T3E|1|A1|A|2636
8T3E|1|A1|A|2637
8T3E|1|A1|C|2638
8T3E|1|A1|G|2639
8T3E|1|A1|A|2640
8T3E|1|A1|U|2641
8T3E|1|A1|A|2642
8T3E|1|A1|A|2643
8T3E|1|A1|C|2644
8T3E|1|A1|G|2645

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain AT

60S ribosomal protein L21-A

Chain Ab

RPL29 isoform 1