HL_8T3E_076

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8T3E|1|A4|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3E_076 not in the Motif Atlas

Homologous match to HL_8P9A_189

Geometric discrepancy: 0.178

The information below is about HL_8P9A_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86883.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

8T3E|1|A4|G|124
8T3E|1|A4|U|125
8T3E|1|A4|A|126
8T3E|1|A4|U|127
8T3E|1|A4|U|128
8T3E|1|A4|C|129

Current chains

Chain A4

5.8 S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AX

60S ribosomal protein L25