HL_8T3E_102

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8T3E|1|B5|G|1243, 8T3E|1|B5|G|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3E_102 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.2529

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8T3E|1|B5|A|1238
8T3E|1|B5|U|1239
8T3E|1|B5|U|1240
8T3E|1|B5|G|1241
8T3E|1|B5|A|1242
8T3E|1|B5|G|1243
8T3E|1|B5|A|1244
8T3E|1|B5|G|1245
8T3E|1|B5|C|1246
8T3E|1|B5|U|1247

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BP

RPS15 isoform 1

Chain Bd

RPS29A isoform 1

Chain Bf

Ubiquitin-40S ribosomal protein S31