HL_8T3E_106

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3E_106 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.3277

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8T3E|1|B5|U|1396
8T3E|1|B5|U|1397
8T3E|1|B5|U|1398
8T3E|1|B5|C|1399
8T3E|1|B5|A|1400
8T3E|1|B5|A|1401
8T3E|1|B5|G|1402

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BR

40S ribosomal protein S17-A