HL_8T3E_108
3D structure
- PDB id
- 8T3E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 8T3E|1|B5|U|1557, 8T3E|1|B5|U|1558, 8T3E|1|B5|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3E_108 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.211
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8T3E|1|B5|A|1550
8T3E|1|B5|U|1551
8T3E|1|B5|U|1552
8T3E|1|B5|G|1553
8T3E|1|B5|U|1554
8T3E|1|B5|A|1555
8T3E|1|B5|A|1556
8T3E|1|B5|U|1557
8T3E|1|B5|U|1558
8T3E|1|B5|A|1559
8T3E|1|B5|U|1560
8T3E|1|B5|U|1561
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BP
- RPS15 isoform 1
- Chain BS
- 40S ribosomal protein S18-A
- Chain BT
- 40S ribosomal protein S19-A
- Chain Bd
- RPS29A isoform 1
Coloring options: