HL_8T3F_026

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8T3F|1|A1|U|1241, 8T3F|1|A1|G|1243, 8T3F|1|A1|A|1244, 8T3F|1|A1|A|1245, 8T3F|1|A1|G|1246, 8T3F|1|A1|U|1247, 8T3F|1|A1|C|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3F_026 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3085

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8T3F|1|A1|C|1239
8T3F|1|A1|A|1240
8T3F|1|A1|U|1241
8T3F|1|A1|G|1242
8T3F|1|A1|G|1243
8T3F|1|A1|A|1244
8T3F|1|A1|A|1245
8T3F|1|A1|G|1246
8T3F|1|A1|U|1247
8T3F|1|A1|C|1248
8T3F|1|A1|G|1249

Current chains

Chain A1

25S rRNA

Nearby chains

Chain DC

Elongation factor 2