HL_8T3F_089

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CCAUUCGG

Length

8 nucleotides

Bulged bases

8T3F|1|B5|C|491, 8T3F|1|B5|A|492, 8T3F|1|B5|C|495, 8T3F|1|B5|G|496

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3F_089 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3555

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8T3F|1|B5|C|490
8T3F|1|B5|C|491
8T3F|1|B5|A|492
8T3F|1|B5|U|493
8T3F|1|B5|U|494
8T3F|1|B5|C|495
8T3F|1|B5|G|496
8T3F|1|B5|G|497

Current chains

Chain B5

18S rRNA

Nearby chains