HL_8T3F_102

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8T3F|1|B5|G|1243, 8T3F|1|B5|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3F_102 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.2286

The information below is about HL_8P9A_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8T3F|1|B5|A|1238
8T3F|1|B5|U|1239
8T3F|1|B5|U|1240
8T3F|1|B5|G|1241
8T3F|1|B5|A|1242
8T3F|1|B5|G|1243
8T3F|1|B5|A|1244
8T3F|1|B5|G|1245
8T3F|1|B5|C|1246
8T3F|1|B5|U|1247

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BP

RPS15 isoform 1

Chain Bd

RPS29A isoform 1

Chain Bf

Ubiquitin-40S ribosomal protein S31