HL_8T4S_020

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

8T4S|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T4S_020 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1624

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8T4S|1|2|G|1054
8T4S|1|2|A|1055
8T4S|1|2|U|1056
8T4S|1|2|C|1057
8T4S|1|2|A|1058
8T4S|1|2|G|1059
8T4S|1|2|A|1060
8T4S|1|2|U|1061
8T4S|1|2|A|1062
8T4S|1|2|C|1063
8T4S|1|2|C|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26