HL_8T5D_016

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8T5D|1|B|G|329, 8T5D|1|B|A|330, 8T5D|1|B|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_016 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1381

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8T5D|1|B|G|327
8T5D|1|B|U|328
8T5D|1|B|G|329
8T5D|1|B|A|330
8T5D|1|B|C|331
8T5D|1|B|A|332
8T5D|1|B|G|333
8T5D|1|B|C|334
8T5D|1|B|C|335

Current chains

Chain B

23S RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24