HL_8T5D_018

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8T5D|1|B|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_018 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1048

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8T5D|1|B|G|410
8T5D|1|B|G|411
8T5D|1|B|A|412
8T5D|1|B|C|413
8T5D|1|B|C|414
8T5D|1|B|A|415
8T5D|1|B|U|416
8T5D|1|B|C|417

Current chains

Chain B

23S RNA

Nearby chains