3D structure

PDB id
8T5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAAUAG
Length
7 nucleotides
Bulged bases
8T5D|1|B|U|615
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T5D_023 not in the Motif Atlas
Geometric match to HL_7Z4O_002
Geometric discrepancy: 0.2717
The information below is about HL_7Z4O_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_49922.4
Basepair signature
cWW-F-F-F
Number of instances in this motif group
10

Unit IDs

8T5D|1|B|C|611
8T5D|1|B|G|612
8T5D|1|B|A|613
8T5D|1|B|A|614
8T5D|1|B|U|615
8T5D|1|B|A|616
8T5D|1|B|G|617

Current chains

Chain B
23S RNA

Nearby chains

Chain E
50S ribosomal protein L4

Coloring options:


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