HL_8T5D_029

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

8T5D|1|B|U|827, 8T5D|1|B|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_029 not in the Motif Atlas

Homologous match to HL_8VTW_024

Geometric discrepancy: 0.1222

The information below is about HL_8VTW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.2

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

8T5D|1|B|U|826
8T5D|1|B|U|827
8T5D|1|B|U|828
8T5D|1|B|A|829
8T5D|1|B|G|830
8T5D|1|B|G|831

Current chains

Chain B

23S RNA

Nearby chains

Chain L

50S ribosomal protein L15