HL_8T5D_036

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_036 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.1252

The information below is about HL_5J7L_164

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8T5D|1|B|U|1222
8T5D|1|B|G|1223
8T5D|1|B|U|1224
8T5D|1|B|G|1225
8T5D|1|B|A|1226
8T5D|1|B|G|1227

Current chains

Chain B

23S RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20

Chain R

Ribosomal protein L21