HL_8T5D_051

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

8T5D|1|B|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_051 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.1254

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8T5D|1|B|C|1806
8T5D|1|B|G|1807
8T5D|1|B|A|1808
8T5D|1|B|A|1809
8T5D|1|B|A|1810
8T5D|1|B|G|1811

Current chains

Chain B

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28