HL_8T5D_053
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 8T5D|1|B|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T5D_053 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.2373
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8T5D|1|B|G|1910
8T5D|1|B|U|1911
8T5D|1|B|A|1912
8T5D|1|B|A|1913
8T5D|1|B|C|1914
8T5D|1|B|U|1915
8T5D|1|B|A|1916
8T5D|1|B|U|1917
8T5D|1|B|A|1918
8T5D|1|B|A|1919
8T5D|1|B|C|1920
Current chains
- Chain B
- 23S RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain v
- Small subunit ribosomal RNA; SSU rRNA
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