HL_8T5D_059

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8T5D|1|B|A|2268, 8T5D|1|B|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_059 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1148

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8T5D|1|B|C|2264
8T5D|1|B|U|2265
8T5D|1|B|A|2266
8T5D|1|B|A|2267
8T5D|1|B|A|2268
8T5D|1|B|G|2269
8T5D|1|B|A|2270
8T5D|1|B|G|2271
8T5D|1|B|U|2272
8T5D|1|B|A|2273
8T5D|1|B|A|2274
8T5D|1|B|C|2275
8T5D|1|B|G|2276

Current chains

Chain B

23S RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27