HL_8T5D_071

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8T5D|1|B|G|2751, 8T5D|1|B|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_071 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.08

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8T5D|1|B|C|2745
8T5D|1|B|U|2746
8T5D|1|B|G|2747
8T5D|1|B|A|2748
8T5D|1|B|A|2749
8T5D|1|B|A|2750
8T5D|1|B|G|2751
8T5D|1|B|C|2752
8T5D|1|B|A|2753
8T5D|1|B|U|2754
8T5D|1|B|C|2755
8T5D|1|B|U|2756
8T5D|1|B|A|2757
8T5D|1|B|A|2758
8T5D|1|B|G|2759

Current chains

Chain B

23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6