HL_8T5D_088

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_088 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.1249

The information below is about HL_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8T5D|1|v|G|617
8T5D|1|v|C|618
8T5D|1|v|U|619
8T5D|1|v|C|620
8T5D|1|v|A|621
8T5D|1|v|A|622
8T5D|1|v|C|623

Current chains

Chain v

16s RNA

Nearby chains

Chain c

30S ribosomal protein S4

Chain o

30S ribosomal protein S16