HL_8T5D_101

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_101 not in the Motif Atlas

Homologous match to HL_5J7L_027

Geometric discrepancy: 0.1926

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8T5D|1|v|C|1265
8T5D|1|v|G|1266
8T5D|1|v|C|1267
8T5D|1|v|G|1268
8T5D|1|v|A|1269
8T5D|1|v|G|1270

Current chains

Chain v

16s RNA

Nearby chains

Chain l

30S ribosomal protein S13

Chain r

30S ribosomal protein S19