3D structure

PDB id
8T5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAUCAGAAUGC
Length
11 nucleotides
Bulged bases
8T5D|1|v|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T5D_103 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.1279
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8T5D|1|v|G|1356
8T5D|1|v|A|1357
8T5D|1|v|U|1358
8T5D|1|v|C|1359
8T5D|1|v|A|1360
8T5D|1|v|G|1361
8T5D|1|v|A|1362
8T5D|1|v|A|1363
8T5D|1|v|U|1364
8T5D|1|v|G|1365
8T5D|1|v|C|1366

Current chains

Chain v
16s RNA

Nearby chains

Chain h
30S ribosomal protein S9
Chain i
30S ribosomal protein S10
Chain m
30S ribosomal protein S14

Coloring options:


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