HL_8T5H_011

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8T5H|1|B|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_011 not in the Motif Atlas

Geometric match to HL_7RQB_006

Geometric discrepancy: 0.1019

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

8T5H|1|B|G|194
8T5H|1|B|A|195
8T5H|1|B|A|196
8T5H|1|B|A|197
8T5H|1|B|C|198
8T5H|1|B|A|199
8T5H|1|B|U|200
8T5H|1|B|C|201

Current chains

Chain B

23S

Nearby chains

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28