Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8T5H_0011/5/13:22tRNA D-loop
homologous
HL_4TUE_033
NA
HL_8T5H_0021/5/31:39tRNA anticodon loop
homologous
HL_6CFJ_107
HL_81376.1
HL_8T5H_0031/5/53:61T-loop with 2 stacked bulged bases
homologous
HL_4V9Q_215
HL_33597.1
HL_8T5H_0041/A/38:44No text annotation
geometric
HL_5J7L_203
NA
HL_8T5H_0051/A/86:90Mini UNCG
homologous
HL_5J7L_204
NA
HL_8T5H_0061/B/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_8T5H_0071/B/87:95No text annotation
homologous
HL_5J7L_135
NA
HL_8T5H_0081/B/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.6
HL_8T5H_0101/B/158:168No text annotation
homologous
HL_5J7L_138
NA
HL_8T5H_0111/B/194:201No text annotation
geometric
HL_7RQB_006
NA
HL_8T5H_0121/B/225:230No text annotation
homologous
HL_5J7L_140
NA
HL_8T5H_0131/B/246:252No text annotation
homologous
HL_5J7L_141
NA
HL_8T5H_0141/B/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
NA
HL_8T5H_0151/B/319:323No text annotation
homologous
HL_4WF9_011
HL_75660.6
HL_8T5H_0161/B/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_8T5H_0171/B/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_8T5H_0181/B/410:417Pseudoknot geometry
homologous
HL_7A0S_014
HL_30680.4
HL_8T5H_0191/B/462:467GNRA
homologous
HL_8VTW_014
NA
HL_8T5H_0201/B/487:493GNRA
homologous
HL_5J7L_148
NA
HL_8T5H_0211/B/543:550No text annotation
HL_8T5H_0221/B/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
NA
HL_8T5H_0231/B/611:617No text annotation
geometric
HL_361D_002
NA
HL_8T5H_0241/B/629:634GNRA
homologous
HL_5J7L_152
NA
HL_8T5H_0251/B/641:647GNRA
homologous
HL_8VTW_020
NA
HL_8T5H_0261/B/712:719GNRA wlth tandem sheared
homologous
HL_8VTW_021
NA
HL_8T5H_0271/B/744:753No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_8T5H_0281/B/779:785No text annotation
homologous
HL_8VTW_023
NA
HL_8T5H_0291/B/826:831No text annotation
homologous
HL_8VTW_024
NA
HL_8T5H_1071/B/955:962GNRA
homologous
HL_7A0S_026
HL_34789.1
HL_8T5H_0321/B/978:985No text annotation
homologous
HL_5J7L_160
NA
HL_8T5H_0361/B/1222:1227GNRA
homologous
HL_5J7L_164
NA
HL_8T5H_0371/B/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_8T5H_0381/B/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_8T5H_0391/B/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_8T5H_0401/B/1389:1398No text annotation
homologous
HL_5J7L_168
NA
HL_8T5H_0411/B/1450:1461No text annotation
geometric
HL_8C3A_039
NA
HL_8T5H_0421/B/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
NA
HL_8T5H_0441/B/1565:1568Mini UNCG
homologous
HL_5J7L_172
NA
HL_8T5H_0451/B/1612:1619No text annotation
homologous
HL_7A0S_040
HL_28592.1
HL_8T5H_0461/B/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_8T5H_0471/B/1691:1696UNCG
geometric
HL_5J7L_175
NA
HL_8T5H_0491/B/1752:1756No text annotation
homologous
HL_5J7L_177
NA
HL_8T5H_0501/B/1777:1787No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_8T5H_0511/B/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_8T5H_0531/B/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_8T5H_0541/B/1949:1957No text annotation
homologous
HL_8VTW_048
NA
HL_8T5H_0551/B/2027:2036No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_8T5H_0571/B/2209:2215No text annotation
homologous
HL_5J7L_185
NA
HL_8T5H_0581/B/2248:2256No text annotation
homologous
HL_7A0S_052
HL_11974.1
HL_8T5H_0591/B/2264:2276No text annotation
homologous
HL_5J7L_187
NA
HL_8T5H_1081/B/2304:2312No text annotation
homologous
HL_5J7L_219
NA
HL_8T5H_0611/B/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
NA
HL_8T5H_0621/B/2356:2361GNRA
homologous
HL_5J7L_190
NA
HL_8T5H_0631/B/2374:2379GNRA
homologous
HL_8VTW_057
NA
HL_8T5H_0641/B/2404:2413No text annotation
homologous
HL_5J7L_192
NA
HL_8T5H_0651/B/2471:2479No text annotation
homologous
HL_4WF9_056
HL_52011.1
HL_8T5H_1091/B/2528:2535GNRA variation
homologous
HL_5J7L_194
NA
HL_8T5H_0671/B/2551:2557No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_8T5H_0681/B/2594:2599GNRA
homologous
HL_8VTW_062
NA
HL_8T5H_0691/B/2658:2663GNRA
homologous
HL_5J7L_197
NA
HL_8T5H_0701/B/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_8T5H_0711/B/2745:2759No text annotation
homologous
HL_5J7L_199
NA
HL_8T5H_0731/B/2819:2827No text annotation
homologous
HL_5J7L_201
NA
HL_8T5H_0741/B/2856:2861GNRA
homologous
HL_7A0S_068
HL_34789.1
HL_8T5H_0751/v/12:22No text annotation
homologous
HL_5J7L_001
NA
HL_8T5H_0771/v/158:163GNRA
homologous
HL_4LFB_003
HL_34789.1
HL_8T5H_0781/v/186:191GNRA
homologous
HL_5J7L_004
NA
HL_8T5H_0801/v/259:267GNRA related
homologous
HL_5J7L_006
NA
HL_8T5H_0811/v/296:301GNRA
homologous
HL_5J7L_007
NA
HL_8T5H_0821/v/320:333No text annotation
homologous
HL_4LFB_008
HL_39665.1
HL_8T5H_0831/v/342:347UNCG
homologous
HL_5J7L_009
NA
HL_8T5H_0841/v/379:384GNRA
homologous
HL_5J7L_010
NA
HL_8T5H_0851/v/419:424UNCG
homologous
HL_5J7L_011
NA
HL_8T5H_0861/v/462:470GNRA wlth extra near cWW
homologous
HL_5J7L_012
NA
HL_8T5H_0871/v/522:527No text annotation
geometric
HL_2ZNI_001
HL_75660.6
HL_8T5H_0881/v/617:623GNRA-like with tWH
homologous
HL_5J7L_014
NA
HL_8T5H_0891/v/689:698No text annotation
homologous
HL_4LFB_015
HL_38491.1
HL_8T5H_0901/v/726:731GNRA
homologous
HL_4LFB_016
HL_34789.1
HL_8T5H_0911/v/786:796No text annotation
homologous
HL_5J7L_017
NA
HL_8T5H_0931/v/862:867GNRA
homologous
HL_4LFB_019
HL_34789.1
HL_8T5H_0941/v/897:902GNRA
homologous
HL_4LFB_020
HL_34789.1
HL_8T5H_0951/v/963:972No text annotation
homologous
HL_5J7L_021
NA
HL_8T5H_0961/v/1012:1017GNRA
homologous
HL_4LFB_022
HL_34789.1
HL_8T5H_0971/v/1076:1081GNRA
homologous
HL_5J7L_023
NA
HL_8T5H_0981/v/1089:1096T-loop related
homologous
HL_4LFB_025
HL_63894.1
HL_8T5H_1011/v/1265:1270No text annotation
homologous
HL_6CZR_099
NA
HL_8T5H_1021/v/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_93658.1
HL_8T5H_1031/v/1356:1366No text annotation
homologous
HL_4LFB_030
HL_86432.1
HL_8T5H_1051/v/1515:1520GNRA variation
geometric
HL_4V88_222
NA

Problematic loops

#loop idProblemSequence
HL_8T5H_009UNCG
HL_8T5H_106No text annotation
HL_8T5H_030No text annotation
HL_8T5H_031tRNA anticodon loop
HL_8T5H_033No text annotation
HL_8T5H_034GNRA wlth tandem sheared
HL_8T5H_035No text annotation
HL_8T5H_043UNCG
HL_8T5H_048Mini UNCG
HL_8T5H_052GNRA
HL_8T5H_056No text annotation
HL_8T5H_060No text annotation
HL_8T5H_066No text annotation
HL_8T5H_072No text annotation
HL_8T5H_076No text annotation
HL_8T5H_079No text annotation
HL_8T5H_110No text annotation
HL_8T5H_092No text annotation
HL_8T5H_099No text annotation
HL_8T5H_100GNRA
HL_8T5H_104UNCG

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8T5H_0011/A/17:18,
1/A/65:67
Major groove intercalation
homologous
IL_5J7L_355
NA
IL_8T5H_0021/A/23:28,
1/A/56:60
No text annotation
homologous
IL_7A0S_103
IL_18472.5
IL_8T5H_0041/A/34:38,
1/A/44:48
Symmetric double minor groove platform
homologous
IL_5J7L_358
NA
IL_8T5H_0051/A/71:79,
1/A/97:105
Bacterial 5S Loop E
homologous
IL_5J7L_359
NA
IL_8T5H_0061/B/24:30,
1/B/510:516
Triple sheared with non-canonical cWW
homologous
IL_4WF9_001
IL_22311.1
IL_8T5H_0071/B/36:37,
1/B/442:444
No text annotation
homologous
IL_8VTW_002
NA
IL_8T5H_0081/B/43:44,
1/B/434:436
Minor groove platform
homologous
IL_5J7L_247
NA
IL_8T5H_0091/B/81:85,
1/B/97:105
No text annotation
homologous
IL_5J7L_248
NA
IL_8T5H_0101/B/183:184,
1/B/212:214
Single stack bend
homologous
IL_4WF9_007
IL_15011.1
IL_8T5H_0111/B/188:194,
1/B/201:208
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_250
NA
IL_8T5H_0121/B/239:245,
1/B/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_8T5H_0131/B/269:271,
1/B/366:370
No text annotation
homologous
IL_5J7L_252
NA
IL_8T5H_0161/B/293:295,
1/B/343:347
No text annotation
homologous
IL_4WF9_014
IL_76658.1
IL_8T5H_0171/B/481:484,
1/B/496:509
No text annotation
homologous
IL_5J7L_255
NA
IL_8T5H_0181/B/536:539,
1/B/554:557
Double sheared
homologous
IL_5J7L_256
NA
IL_8T5H_0191/B/564:566,
1/B/575:577
Isolated non-canonical cWW pair
homologous
IL_4WF9_017
IL_71625.1
IL_8T5H_0201/B/606:610,
1/B/618:622
AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_8T5H_0211/B/672:674,
1/B/806:808
No text annotation
geometric
IL_7RQB_017
NA
IL_8T5H_0221/B/674:678,
1/B/799:806
tHW-tHW cross-strand stack
homologous
IL_5J7L_260
NA
IL_8T5H_0231/B/697:698,
1/B/763:765
Single bulged A
geometric
IL_5J7L_261
NA
IL_8T5H_0241/B/702:703,
1/B/728:730
Single bulged G
homologous
IL_8VTW_019
NA
IL_8T5H_0251/B/703:707,
1/B/724:728
Triple sheared
geometric
IL_7RQB_021
NA
IL_8T5H_0261/B/738:740,
1/B/757:758
Major groove platform
homologous
IL_5J7L_264
NA
IL_8T5H_0271/B/775:777,
1/B/787:791
Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_8T5H_0281/B/837:838,
1/B/940:942
Single stack bend
homologous
IL_7A0S_022
IL_15011.1
IL_8T5H_0291/B/844:848,
1/B/930:934
No text annotation
homologous
IL_5J7L_399
NA
IL_8T5H_1841/B/849:850,
1/B/927:929
Single stack bend
homologous
IL_5J7L_269
NA
IL_8T5H_0301/B/850:851,
1/B/926:928
Single stack bend
homologous
IL_5J7L_269
NA
IL_8T5H_0311/B/856:862,
1/B/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
NA
IL_8T5H_0321/B/862:863,
1/B/913:915
Multiple bulged bases
geometric
IL_5XWP_001
IL_71421.1
IL_8T5H_0331/B/864:868,
1/B/909:912
C-loop with bulged stacked A's
homologous
IL_5J7L_272
NA
IL_8T5H_0341/B/870:872,
1/B/905:907
Isolated cWS basepair
homologous
IL_4WF9_034
NA
IL_8T5H_0351/B/875:879,
1/B/898:902
Double sheared with non-canonical cWW
homologous
IL_5J7L_274
NA
IL_8T5H_0371/B/994:996,
1/B/1159:1160
Single bulged C
homologous
IL_8VTW_034
NA
IL_8T5H_0381/B/998:1002,
1/B/1153:1157
UAA/GAN
homologous
IL_4WF9_036
IL_08938.1
IL_8T5H_0391/B/1004:1011,
1/B/1150:1151
SSU/LSU pseudoknot
geometric
IL_5J7L_278
NA
IL_8T5H_0401/B/1011:1013,
1/B/1149:1150
Single bulged U
homologous
IL_5J7L_279
NA
IL_8T5H_0411/B/1018:1024,
1/B/1140:1144
Kink-turn related
homologous
IL_4WF9_039
IL_57188.6
IL_8T5H_0421/B/1024:1030,
1/B/1124:1140
No text annotation
geometric
IL_5J7L_281
NA
IL_8T5H_0431/B/1031:1034,
1/B/1121:1123
Isolated non-canonical cWW pair
homologous
IL_5J7L_282
NA
IL_8T5H_0441/B/1038:1041,
1/B/1114:1117
Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
NA
IL_8T5H_0451/B/1043:1052,
1/B/1107:1112
No text annotation
IL_8T5H_0481/B/1196:1198,
1/B/1247:1250
Isolated cWS basepair
homologous
IL_5J7L_286
NA
IL_8T5H_0491/B/1202:1206,
1/B/1240:1243
No text annotation
homologous
IL_5J7L_287
NA
IL_8T5H_0501/B/1208:1215,
1/B/1234:1238
Kink-turn
homologous
IL_5J7L_288
NA
IL_8T5H_0511/B/1262:1269,
1/B/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_8T5H_0521/B/1310:1313,
1/B/1603:1604
Major groove platform; stack outside cWW
homologous
IL_8VTW_049
NA
IL_8T5H_0531/B/1319:1323,
1/B/1331:1333
C-loop
homologous
IL_5J7L_291
NA
IL_8T5H_0541/B/1351:1355,
1/B/1376:1380
UAA/GAN
homologous
IL_5J7L_292
NA
IL_8T5H_0551/B/1357:1361,
1/B/1370:1374
tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_8T5H_0571/B/1417:1421,
1/B/1577:1581
UAA/GAN
homologous
IL_5J7L_295
NA
IL_8T5H_0581/B/1432:1435,
1/B/1557:1561
Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_8T5H_0591/B/1437:1440,
1/B/1551:1555
tSH-tHW
homologous
IL_5J7L_297
NA
IL_8T5H_0601/B/1468:1471,
1/B/1520:1524
No text annotation
homologous
IL_5J7L_299
NA
IL_8T5H_0611/B/1474:1478,
1/B/1513:1517
tSH-tHW-tHS
homologous
IL_5J7L_300
NA
IL_8T5H_0621/B/1481:1482,
1/B/1507:1510
180 degree turn
homologous
IL_5J7L_301
NA
IL_8T5H_0631/B/1489:1491,
1/B/1499:1500
Single bulged A
homologous
IL_8VTW_061
NA
IL_8T5H_0641/B/1526:1529,
1/B/1542:1546
UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_8T5H_0651/B/1651:1656,
1/B/2004:2006
No text annotation
homologous
IL_5J7L_304
NA
IL_8T5H_0661/B/1663:1665,
1/B/1995:1997
Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_8T5H_0671/B/1666:1669,
1/B/1993:1994
Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_8T5H_1861/B/1666:1674,
1/B/1990:1994
No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_8T5H_0681/B/1669:1674,
1/B/1990:1993
Intercalated tWH
homologous
IL_4WF9_065
IL_28217.1
IL_8T5H_0691/B/1686:1691,
1/B/1696:1702
No text annotation
homologous
IL_8VTW_067
NA
IL_8T5H_0701/B/1712:1718,
1/B/1742:1746
6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
NA
IL_8T5H_0711/B/1720:1724,
1/B/1736:1740
Triple sheared
homologous
IL_5J7L_310
NA
IL_8T5H_0731/B/1770:1771,
1/B/1980:1982
Single bulged A
homologous
IL_4WF9_068
IL_14190.1
IL_8T5H_0741/B/1798:1804,
1/B/1813:1821
Kink-turn related
homologous
IL_5J7L_313
NA
IL_8T5H_0751/B/1837:1840,
1/B/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_7A0S_066
IL_73108.1
IL_8T5H_0761/B/1841:1842,
1/B/1898:1901
Major groove intercalation
homologous
IL_5J7L_315
NA
IL_8T5H_0771/B/1846:1849,
1/B/1893:1894
No text annotation
homologous
IL_8VTW_072
NA
IL_8T5H_1871/B/1851:1860,
1/B/1882:1891
No text annotation
homologous
IL_5J7L_387
NA
IL_8T5H_0781/B/1864:1867,
1/B/1874:1878
UAA/GAN related
homologous
IL_5J7L_317
NA
IL_8T5H_0791/B/1933:1934,
1/B/1964:1967
Bulged stacked bases
geometric
IL_5J7L_318
NA
IL_8T5H_0801/B/1934:1945,
1/B/1961:1964
No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_8T5H_0811/B/2050:2052,
1/B/2617:2618
Major groove platform
homologous
IL_8VTW_077
NA
IL_8T5H_0821/B/2054:2056,
1/B/2612:2615
No text annotation
homologous
IL_4WF9_079
IL_80025.1
IL_8T5H_0831/B/2067:2069,
1/B/2442:2443
Single bulged U
homologous
IL_7A0S_075
IL_97561.1
IL_8T5H_0841/B/2070:2071,
1/B/2438:2441
Minor groove platform
homologous
IL_7A0S_076
IL_34520.1
IL_8T5H_0851/B/2081:2083,
1/B/2236:2239
Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_8T5H_0861/B/2085:2087,
1/B/2232:2234
Isolated non-canonical cWW pair
homologous
IL_5J7L_326
NA
IL_8T5H_0871/B/2202:2204,
1/B/2220:2221
Single bulged U
homologous
IL_5J7L_331
NA
IL_8T5H_0881/B/2297:2299,
1/B/2317:2321
No text annotation
homologous
IL_5J7L_332
NA
IL_8T5H_0891/B/2350:2353,
1/B/2364:2367
Double sheared
homologous
IL_4WF9_087
IL_58355.1
IL_8T5H_0911/B/2401:2403,
1/B/2414:2415
Single bulged U
homologous
IL_5J7L_334
NA
IL_8T5H_0921/B/2453:2454,
1/B/2498:2500
Single stack bend
geometric
IL_4WF9_089
IL_15011.1
IL_8T5H_0931/B/2454:2455,
1/B/2496:2498
Major groove platform
homologous
IL_4WF9_090
IL_48076.7
IL_8T5H_0941/B/2457:2459,
1/B/2493:2494
Major groove platform
geometric
IL_4WF9_091
IL_48076.7
IL_8T5H_0951/B/2459:2461,
1/B/2489:2493
Major groove minor groove platform with extra cWW
homologous
IL_8VTW_093
NA
IL_8T5H_0961/B/2466:2470,
1/B/2480:2484
Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_8T5H_0971/B/2507:2508,
1/B/2580:2582
Major groove platform
homologous
IL_7A0S_088
IL_46637.1
IL_8T5H_0981/B/2510:2512,
1/B/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_4WF9_095
IL_68118.1
IL_8T5H_0991/B/2512:2513,
1/B/2571:2574
No text annotation
homologous
IL_5J7L_341
NA
IL_8T5H_1001/B/2522:2523,
1/B/2540:2543
Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_8T5H_1021/B/2591:2592,
1/B/2601:2603
Single bulged A
homologous
IL_5J7L_344
NA
IL_8T5H_1031/B/2636:2640,
1/B/2774:2782
tSH-tHS-tHW
homologous
IL_5J7L_345
NA
IL_8T5H_1041/B/2652:2658,
1/B/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_5J7L_346
NA
IL_8T5H_1051/B/2680:2684,
1/B/2725:2727
C-loop
homologous
IL_5J7L_347
NA
IL_8T5H_1061/B/2687:2691,
1/B/2718:2722
UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_8T5H_1071/B/2695:2696,
1/B/2711:2714
Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_8T5H_1081/B/2737:2742,
1/B/2762:2767
UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_8T5H_1101/B/2806:2811,
1/B/2889:2892
No text annotation
homologous
IL_5J7L_351
NA
IL_8T5H_1111/B/2838:2839,
1/B/2878:2880
Major groove intercalation
homologous
IL_8VTW_107
NA
IL_8T5H_1121/B/2843:2846,
1/B/2870:2874
Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_8T5H_1131/B/2847:2852,
1/B/2865:2869
tHS double platform
homologous
IL_5J7L_354
NA
IL_8T5H_1141/v/30:32,
1/v/552:553
Single bulged G
homologous
IL_5J7L_001
NA
IL_8T5H_1151/v/44:45,
1/v/396:398
Single bulged A
homologous
IL_5J7L_002
NA
IL_8T5H_1161/v/47:52,
1/v/359:361
No text annotation
homologous
IL_5J7L_003
NA
IL_8T5H_1171/v/54:56,
1/v/356:357
Minor groove platform
homologous
IL_4LFB_004
IL_34520.1
IL_8T5H_1181/v/63:66,
1/v/103:104
Multiple bulged bases
homologous
IL_5J7L_005
NA
IL_8T5H_1191/v/67:69,
1/v/99:102
Minor groove platform with extra cWW
homologous
IL_5J7L_006
NA
IL_8T5H_1241/v/128:131,
1/v/231:233
Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_8T5H_1251/v/132:136,
1/v/227:230
Minor groove platform related
homologous
IL_5J7L_010
NA
IL_8T5H_1261/v/144:146,
1/v/176:178
Isolated cWH basepair
homologous
IL_5J7L_011
NA
IL_8T5H_1271/v/147:153,
1/v/168:175
tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
NA
IL_8T5H_1291/v/242:247,
1/v/277:284
Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_8T5H_1301/v/249:252,
1/v/274:275
No text annotation
homologous
IL_4LFB_012
IL_22002.1
IL_8T5H_1311/v/292:293,
1/v/304:308
C-loop
homologous
IL_4LFB_013
IL_06671.1
IL_8T5H_1321/v/367:369,
1/v/392:393
Single bulged U
homologous
IL_5J7L_017
NA
IL_8T5H_1331/v/371:375,
1/v/389:390
C-loop
geometric
IL_5J7L_018
NA
IL_8T5H_1341/v/375:376,
1/v/387:389
Single bulged G
homologous
IL_5J7L_019
NA
IL_8T5H_1351/v/409:416,
1/v/427:433
No text annotation
homologous
IL_5J7L_020
NA
IL_8T5H_1361/v/440:442,
1/v/492:497
No text annotation
homologous
IL_5J7L_021
NA
IL_8T5H_1371/v/446:450,
1/v/483:488
tSH-tHW-tWW
geometric
IL_5J7L_022
NA
IL_8T5H_1381/v/450:455,
1/v/477:483
No text annotation
homologous
IL_5J7L_023
NA
IL_8T5H_1391/v/504:511,
1/v/540:541
SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_11411.1
IL_8T5H_1401/v/515:521,
1/v/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_8T5H_1411/v/569:575,
1/v/880:881
No text annotation
homologous
IL_5J7L_026
NA
IL_8T5H_1421/v/580:584,
1/v/757:761
tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_8T5H_1431/v/593:596,
1/v/644:646
No text annotation
geometric
IL_8C3A_508
NA
IL_8T5H_1941/v/597:598,
1/v/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_73108.1
IL_8T5H_1451/v/605:612,
1/v/628:633
No text annotation
homologous
IL_5J7L_030
NA
IL_8T5H_1461/v/654:655,
1/v/751:754
Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_74641.1
IL_8T5H_1471/v/658:659,
1/v/746:748
Single stack bend
homologous
IL_5J7L_032
NA
IL_8T5H_1481/v/662:666,
1/v/740:743
Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_8T5H_1911/v/673:677,
1/v/713:717
Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_71154.1
IL_8T5H_1501/v/684:688,
1/v/699:706
Kink-turn
homologous
IL_5J7L_035
NA
IL_8T5H_1511/v/774:778,
1/v/804:805
Left turn
homologous
IL_4LFB_032
IL_29346.3
IL_8T5H_1521/v/779:783,
1/v/799:803
tSH-tHW-tHS
homologous
IL_5J7L_037
NA
IL_8T5H_1541/v/887:894,
1/v/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_8T5H_1551/v/922:923,
1/v/1393:1395
Single bulged A
homologous
IL_5J7L_039
NA
IL_8T5H_1561/v/925:927,
1/v/1390:1391
Single bulged G
homologous
IL_4LFB_036
IL_28408.1
IL_8T5H_1571/v/933:935,
1/v/1380:1384
Minor groove platform
homologous
IL_5J7L_041
NA
IL_8T5H_1591/v/953:954,
1/v/1226:1228
Minor groove platform
geometric
IL_4V88_445
NA
IL_8T5H_1601/v/982:984,
1/v/1221:1222
No text annotation
IL_8T5H_1611/v/993:997,
1/v/1044:1045
Minor groove platform
geometric
IL_5J7L_043
NA
IL_8T5H_1641/v/1048:1050,
1/v/1208:1209
Single bulged U
homologous
IL_5J7L_046
NA
IL_8T5H_1651/v/1052:1056,
1/v/1204:1206
Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_8T5H_1661/v/1057:1058,
1/v/1199:1203
Minor groove platform
homologous
IL_5J7L_048
NA
IL_8T5H_1671/v/1060:1061,
1/v/1195:1197
Single bulged A
homologous
IL_5J7L_049
NA
IL_8T5H_1681/v/1061:1063,
1/v/1193:1195
Isolated non-canonical cWW pair
geometric
IL_5J7L_050
NA
IL_8T5H_1691/v/1124:1132,
1/v/1142:1149
No text annotation
IL_8T5H_1701/v/1158:1161,
1/v/1175:1181
No text annotation
geometric
IL_4LFB_050
IL_32376.1
IL_8T5H_1711/v/1247:1253,
1/v/1284:1290
No text annotation
homologous
IL_5J7L_054
NA
IL_8T5H_1721/v/1255:1258,
1/v/1277:1282
180 degree turn
homologous
IL_4LFB_052
IL_08849.1
IL_8T5H_1731/v/1259:1263,
1/v/1272:1276
No text annotation
IL_8T5H_1741/v/1303:1308,
1/v/1329:1334
No text annotation
geometric
IL_5J7L_057
NA
IL_8T5H_1751/v/1399:1401,
1/v/1501:1504
No text annotation
homologous
IL_5J7L_058
NA
IL_8T5H_1761/v/1401:1404,
1/v/1497:1501
No text annotation
geometric
IL_4V88_464
NA
IL_8T5H_1771/v/1405:1407,
1/v/1494:1496
Isolated non-canonical cWW pair
geometric
IL_5MWI_007
NA
IL_8T5H_1781/v/1407:1410,
1/v/1490:1494
No text annotation
IL_8T5H_1791/v/1412:1414,
1/v/1486:1488
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_8T5H_1801/v/1416:1419,
1/v/1481:1484
Double sheared
homologous
IL_6CZR_169
NA
IL_8T5H_1811/v/1430:1435,
1/v/1466:1470
Triple sheared related
homologous
IL_5J7L_063
NA
IL_8T5H_1921/v/1440:1442,
1/v/1460:1461
Single bulged A
homologous
IL_5J7L_064
NA
IL_8T5H_1831/v/1445:1448,
1/v/1455:1457
No text annotation
homologous
IL_5J7L_065
NA

Problematic loops

#loop idProblemSequence
IL_8T5H_003No text annotation
IL_8T5H_014No text annotation
IL_8T5H_015No text annotation
IL_8T5H_036No text annotation
IL_8T5H_193No text annotation
IL_8T5H_046No text annotation
IL_8T5H_185No text annotation
IL_8T5H_047No text annotation
IL_8T5H_056No text annotation
IL_8T5H_072Single bulged C
IL_8T5H_188No text annotation
IL_8T5H_189No text annotation
IL_8T5H_090Isolated non-canonical cWW pair
IL_8T5H_101Isolated non-canonical cWW pair
IL_8T5H_109Isolated cWH basepair
IL_8T5H_120Minor groove platform
IL_8T5H_121Multiple bulged bases
IL_8T5H_122No text annotation
IL_8T5H_123No text annotation
IL_8T5H_128Minor groove platform with extra cWW
IL_8T5H_190No text annotation
IL_8T5H_144No text annotation
IL_8T5H_149No text annotation
IL_8T5H_153No text annotation
IL_8T5H_158Isolated cWS basepair
IL_8T5H_162Single stack bend
IL_8T5H_163No text annotation
IL_8T5H_182Isolated non-canonical cWW with bulges

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8T5H_0011/A/10:16,
1/A/68:70,
1/A/106:110
No text annotation
homologous
J3_5J7L_049
NA
J3_8T5H_0191/B/30:31,
1/B/474:481,
1/B/509:510
No text annotation
geometric
J3_5J7L_036
NA
J3_8T5H_0201/B/30:31,
1/B/474:484,
1/B/496:510
No text annotation
homologous
J3_5J7L_066
NA
J3_8T5H_0211/B/32:35,
1/B/445:461,
1/B/468:473
No text annotation
homologous
J3_9DFE_003
J3_07616.1
J3_8T5H_0221/B/56:57,
1/B/70:76,
1/B/110:114
No text annotation
homologous
J3_5J7L_037
NA
J3_8T5H_0021/B/683:689,
1/B/773:775,
1/B/791:794
No text annotation
homologous
J3_5J7L_038
NA
J3_8T5H_0031/B/698:700,
1/B/732:736,
1/B/760:763
No text annotation
homologous
J3_8VTW_002
NA
J3_8T5H_0051/B/1298:1303,
1/B/1625:1627,
1/B/1639:1642
No text annotation
homologous
J3_5J7L_041
NA
J3_8T5H_0061/B/1306:1309,
1/B/1605:1611,
1/B/1620:1622
No text annotation
homologous
J3_5J7L_042
NA
J3_8T5H_0241/B/1344:1350,
1/B/1381:1385,
1/B/1402:1403
No text annotation
J3_8T5H_0251/B/1424:1429,
1/B/1564:1565,
1/B/1568:1574
No text annotation
homologous
J3_5J7L_069
NA
J3_8T5H_0071/B/2091:2093,
1/B/2196:2200,
1/B/2223:2228
Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_8T5H_0261/B/2282:2284,
1/B/2384:2395,
1/B/2421:2427
No text annotation
homologous
J3_5J7L_070
NA
J3_8T5H_0081/B/2295:2297,
1/B/2321:2323,
1/B/2332:2337
No text annotation
geometric
J3_5J7L_045
NA
J3_8T5H_0271/B/2295:2299,
1/B/2317:2323,
1/B/2332:2337
No text annotation
homologous
J3_5J7L_071
NA
J3_8T5H_0091/B/2517:2520,
1/B/2545:2547,
1/B/2561:2567
No text annotation
homologous
J3_5J7L_046
NA
J3_8T5H_0281/B/2789:2791,
1/B/2805:2806,
1/B/2892:2894
No text annotation
homologous
J3_5J7L_047
NA
J3_8T5H_0101/B/2812:2815,
1/B/2831:2836,
1/B/2882:2888
No text annotation
homologous
J3_5J7L_048
NA
J3_8T5H_0291/v/46:47,
1/v/361:367,
1/v/393:395
No text annotation
geometric
J3_8C3A_082
NA
J3_8T5H_0301/v/46:52,
1/v/359:367,
1/v/393:395
No text annotation
homologous
J3_5J7L_050
NA
J3_8T5H_0311/v/586:588,
1/v/651:654,
1/v/754:755
No text annotation
geometric
J3_5J7L_002
NA
J3_8T5H_0321/v/586:588,
1/v/651:655,
1/v/751:755
No text annotation
homologous
J3_5J7L_051
NA
J3_8T5H_0331/v/672:673,
1/v/717:725,
1/v/732:734
No text annotation
homologous
J3_5J7L_003
NA
J3_8T5H_0111/v/826:829,
1/v/857:861,
1/v/868:874
No text annotation
homologous
J3_5J7L_004
NA
J3_8T5H_0121/v/936:939,
1/v/1344:1350,
1/v/1372:1379
No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_8T5H_0131/v/943:946,
1/v/1235:1237,
1/v/1337:1340
No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_8T5H_0341/v/955:962,
1/v/973:982,
1/v/1222:1225
No text annotation
J3_8T5H_0151/v/990:993,
1/v/1045:1047,
1/v/1210:1215
No text annotation
homologous
J3_5J7L_007
NA
J3_8T5H_0351/v/990:997,
1/v/1044:1047,
1/v/1210:1215
No text annotation
homologous
J3_5J7L_053
NA
J3_8T5H_0161/v/1063:1068,
1/v/1107:1113,
1/v/1187:1193
No text annotation
homologous
J3_4LFB_007
J3_01343.1
J3_8T5H_0361/v/1073:1074,
1/v/1083:1087,
1/v/1098:1102
No text annotation
homologous
J3_6CZR_024
NA
J3_8T5H_0171/v/1116:1118,
1/v/1155:1158,
1/v/1181:1184
No text annotation
homologous
J3_5J7L_010
NA
J3_8T5H_0371/v/1116:1118,
1/v/1155:1161,
1/v/1175:1184
No text annotation
homologous
J3_4LFB_018
J3_40706.1
J3_8T5H_0181/v/1237:1241,
1/v/1296:1303,
1/v/1334:1337
No text annotation
homologous
J3_4LFB_009
J3_03192.1
J4_8T5H_0011/5/7:10,
1/5/25:27,
1/5/43:49,
1/5/65:66
tRNA junction
homologous
J4_4WT8_034
NA
J4_8T5H_0021/B/268:269,
1/B/370:375,
1/B/399:406,
1/B/421:424
No text annotation
homologous
J4_5J7L_018
NA
J4_8T5H_0031/B/297:301,
1/B/316:319,
1/B/323:325,
1/B/337:341
No text annotation
homologous
J4_5J7L_019
NA
J4_8T5H_0041/B/601:604,
1/B/624:628,
1/B/635:638,
1/B/650:656
No text annotation
homologous
J4_5J7L_020
NA
J4_8T5H_0051/B/1270:1276,
1/B/1294:1295,
1/B/1645:1648,
1/B/2009:2010
No text annotation
homologous
J4_5J7L_021
NA
J4_8T5H_0061/B/1310:1314,
1/B/1338:1343,
1/B/1404:1405,
1/B/1597:1604
No text annotation
homologous
J4_5J7L_022
NA
J4_8T5H_0071/B/1313:1314,
1/B/1338:1343,
1/B/1404:1405,
1/B/1597:1603
No text annotation
homologous
J4_5J7L_023
NA
J4_8T5H_0081/B/1444:1445,
1/B/1466:1467,
1/B/1525:1526,
1/B/1546:1547
No text annotation
homologous
J4_5J7L_024
NA
J4_8T5H_0091/B/1772:1776,
1/B/1788:1792,
1/B/1827:1830,
1/B/1975:1979
No text annotation
homologous
J4_5J7L_025
NA
J4_8T5H_0101/B/1833:1835,
1/B/1905:1906,
1/B/1924:1933,
1/B/1967:1972
No text annotation
homologous
J4_5J7L_026
NA
J4_8T5H_0111/B/2285:2289,
1/B/2343:2347,
1/B/2370:2372,
1/B/2381:2383
No text annotation
homologous
J4_5J7L_027
NA
J4_8T5H_0121/B/2643:2646,
1/B/2674:2676,
1/B/2731:2735,
1/B/2769:2771
No text annotation
homologous
J4_5J7L_028
NA
J4_8T5H_0131/v/115:122,
1/v/239:240,
1/v/286:289,
1/v/311:312
No text annotation
homologous
J4_5J7L_001
NA
J4_8T5H_0141/v/142:144,
1/v/178:184,
1/v/193:198,
1/v/219:221
No text annotation
homologous
J4_5J7L_002
NA
J4_8T5H_0151/v/575:577,
1/v/764:769,
1/v/810:821,
1/v/879:880
No text annotation
homologous
J4_5J7L_003
NA
J5_8T5H_0011/B/47:54,
1/B/116:121,
1/B/130:131,
1/B/148:150,
1/B/176:178
No text annotation
homologous
J5_5J7L_013
NA
J5_8T5H_0021/B/531:533,
1/B/560:564,
1/B/577:579,
1/B/1261:1262,
1/B/2017:2018
No text annotation
homologous
J5_5J7L_014
NA
J5_8T5H_0031/B/584:589,
1/B/668:671,
1/B/809:812,
1/B/1195:1196,
1/B/1250:1256
No text annotation
homologous
J5_5J7L_015
NA
J5_8T5H_0041/B/1674:1682,
1/B/1706:1707,
1/B/1751:1752,
1/B/1756:1764,
1/B/1988:1990
No text annotation
homologous
J5_5J7L_016
NA
J5_8T5H_0051/B/2057:2064,
1/B/2446:2453,
1/B/2500:2506,
1/B/2583:2588,
1/B/2606:2611
No text annotation
J5_8T5H_0061/B/2074:2077,
1/B/2243:2246,
1/B/2258:2259,
1/B/2281:2282,
1/B/2427:2435
No text annotation
homologous
J5_4WF9_007
J5_39529.2
J5_8T5H_0071/v/36:39,
1/v/403:406,
1/v/436:440,
1/v/497:500,
1/v/545:548
No text annotation
homologous
J5_5J7L_001
NA
J5_8T5H_0081/v/36:39,
1/v/403:406,
1/v/436:442,
1/v/492:500,
1/v/545:548
No text annotation
homologous
J5_5J7L_002
NA
J5_8T5H_0091/v/58:61,
1/v/106:113,
1/v/314:316,
1/v/337:339,
1/v/350:354
No text annotation
homologous
J5_5J7L_003
NA
J6_8T5H_0011/B/45:46,
1/B/179:183,
1/B/214:224,
1/B/231:235,
1/B/262:266,
1/B/426:433
No text annotation
J6_8T5H_0021/B/2074:2077,
1/B/2243:2246,
1/B/2258:2259,
1/B/2281:2284,
1/B/2384:2395,
1/B/2421:2435
No text annotation
J7_8T5H_0011/B/8:15,
1/B/525:531,
1/B/2018:2023,
1/B/2040:2043,
1/B/2625:2630,
1/B/2788:2789,
1/B/2894:2895
No text annotation
J7_8T5H_0021/B/817:822,
1/B/835:838,
1/B/940:946,
1/B/971:976,
1/B/987:991,
1/B/1163:1164,
1/B/1185:1190
No text annotation

Problematic loops

#loop idProblemSequence
J3_8T5H_004No text annotation
J3_8T5H_023No text annotation
J3_8T5H_014No text annotation

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