HL_8T5H_013

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_013 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.0745

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

8T5H|1|B|C|246
8T5H|1|B|G|247
8T5H|1|B|G|248
8T5H|1|B|C|249
8T5H|1|B|G|250
8T5H|1|B|A|251
8T5H|1|B|G|252

Current chains

Chain B

23S

Nearby chains

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28