3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGACCAUC
Length
8 nucleotides
Bulged bases
8T5H|1|B|G|411
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T5H_018 not in the Motif Atlas
Homologous match to HL_7A0S_014
Geometric discrepancy: 0.0993
The information below is about HL_7A0S_014
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_30680.3
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
15

Unit IDs

8T5H|1|B|G|410
8T5H|1|B|G|411
8T5H|1|B|A|412
8T5H|1|B|C|413
8T5H|1|B|C|414
8T5H|1|B|A|415
8T5H|1|B|U|416
8T5H|1|B|C|417

Current chains

Chain B
23S

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2975 s
Application loaded.