HL_8T5H_030

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUCAUCCCGAC

Length

12 nucleotides

Bulged bases

8T5H|1|B|U|887, 8T5H|1|B|C|888, 8T5H|1|B|C|890, 8T5H|1|B|G|891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T5H|1|B|G|882
8T5H|1|B|G|883
8T5H|1|B|U|884
8T5H|1|B|C|885
8T5H|1|B|A|886
8T5H|1|B|U|887
8T5H|1|B|C|888
8T5H|1|B|C|889
8T5H|1|B|C|890
8T5H|1|B|G|891
8T5H|1|B|A|892
8T5H|1|B|C|893

Current chains

Chain B

23S

Nearby chains

Chain F

50S ribosomal protein L5

Chain l

30S ribosomal protein S13

Chain r

30S ribosomal protein S19