HL_8T5H_031

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

8T5H|1|B|U|958, 8T5H|1|B|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_031 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.252

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8T5H|1|B|G|954
8T5H|1|B|U|955
8T5H|1|B|G|956
8T5H|1|B|C|957
8T5H|1|B|U|958
8T5H|1|B|A|959
8T5H|1|B|A|960
8T5H|1|B|C|961
8T5H|1|B|G|962
8T5H|1|B|U|963

Current chains

Chain B

23S

Nearby chains

Chain A

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16