HL_8T5H_032

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_032 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.1436

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8T5H|1|B|G|978
8T5H|1|B|A|979
8T5H|1|B|A|980
8T5H|1|B|A|981
8T5H|1|B|C|982
8T5H|1|B|A|983
8T5H|1|B|A|984
8T5H|1|B|C|985

Current chains

Chain B

23S

Nearby chains

Chain Q

50S ribosomal protein L20

Chain R

Ribosomal protein L21

Chain Z

50S ribosomal protein L30