HL_8T5H_038
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUAAUC
- Length
- 7 nucleotides
- Bulged bases
- 8T5H|1|B|U|1325, 8T5H|1|B|U|1329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T5H_038 not in the Motif Atlas
- Homologous match to HL_5J7L_166
- Geometric discrepancy: 0.1109
- The information below is about HL_5J7L_166
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_57176.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8T5H|1|B|G|1324
8T5H|1|B|U|1325
8T5H|1|B|U|1326
8T5H|1|B|A|1327
8T5H|1|B|A|1328
8T5H|1|B|U|1329
8T5H|1|B|C|1330
Current chains
- Chain B
- 23S
Nearby chains
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
Coloring options: