HL_8T5H_048

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCG

Length

4 nucleotides

Bulged bases

8T5H|1|B|U|1729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_048 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.1379

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8T5H|1|B|C|1728
8T5H|1|B|U|1729
8T5H|1|B|C|1730
8T5H|1|B|G|1731

Current chains

Chain B

23S

Nearby chains