3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUGAAGAUGC
Length
10 nucleotides
Bulged bases
8T5H|1|B|A|2030, 8T5H|1|B|A|2031, 8T5H|1|B|G|2032
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T5H_055 not in the Motif Atlas
Homologous match to HL_4WF9_047
Geometric discrepancy: 0.1321
The information below is about HL_4WF9_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_61996.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
7

Unit IDs

8T5H|1|B|G|2027
8T5H|1|B|U|2028
8T5H|1|B|G|2029
8T5H|1|B|A|2030
8T5H|1|B|A|2031
8T5H|1|B|G|2032
8T5H|1|B|A|2033
8T5H|1|B|U|2034
8T5H|1|B|G|2035
8T5H|1|B|C|2036

Current chains

Chain B
23S

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain R
Ribosomal protein L21

Coloring options:


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