HL_8T5H_058
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 8T5H|1|B|G|2250
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T5H_058 not in the Motif Atlas
- Homologous match to HL_7A0S_052
- Geometric discrepancy: 0.1212
- The information below is about HL_7A0S_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8T5H|1|B|C|2248
8T5H|1|B|U|2249
8T5H|1|B|G|2250
8T5H|1|B|G|2251
8T5H|1|B|G|2252
8T5H|1|B|G|2253
8T5H|1|B|C|2254
8T5H|1|B|G|2255
8T5H|1|B|G|2256
Current chains
- Chain B
- 23S
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain M
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L27
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