3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CUGUUCG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T5H_067 not in the Motif Atlas
Homologous match to HL_4WF9_058
Geometric discrepancy: 0.142
The information below is about HL_4WF9_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_48677.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
22

Unit IDs

8T5H|1|B|C|2551
8T5H|1|B|U|2552
8T5H|1|B|G|2553
8T5H|1|B|U|2554
8T5H|1|B|U|2555
8T5H|1|B|C|2556
8T5H|1|B|G|2557

Current chains

Chain B
23S

Nearby chains

No other chains within 10Å

Coloring options:


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