3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
AACUGAGACACGGU
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T5H_082 not in the Motif Atlas
Homologous match to HL_4LFB_008
Geometric discrepancy: 0.1157
The information below is about HL_4LFB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81205.3
Basepair signature
cWW-cWW-tWH-F-tWH-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8T5H|1|v|A|320
8T5H|1|v|A|321
8T5H|1|v|C|322
8T5H|1|v|U|323
8T5H|1|v|G|324
8T5H|1|v|A|325
8T5H|1|v|G|326
8T5H|1|v|A|327
8T5H|1|v|C|328
8T5H|1|v|A|329
8T5H|1|v|C|330
8T5H|1|v|G|331
8T5H|1|v|G|332
8T5H|1|v|U|333

Current chains

Chain v
16S

Nearby chains

Chain o
30S ribosomal protein S16
Chain s
30S ribosomal protein S20

Coloring options:


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