HL_8T5H_083

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8T5H|1|v|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_083 not in the Motif Atlas

Homologous match to HL_5J7L_009

Geometric discrepancy: 0.159

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8T5H|1|v|C|342
8T5H|1|v|U|343
8T5H|1|v|A|344
8T5H|1|v|C|345
8T5H|1|v|G|346
8T5H|1|v|G|347

Current chains

Chain v

16S

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19