HL_8T5H_086

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_086 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3831

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8T5H|1|v|G|462
8T5H|1|v|U|463
8T5H|1|v|U|464
8T5H|1|v|A|465
8T5H|1|v|A|466
8T5H|1|v|U|467
8T5H|1|v|A|468
8T5H|1|v|C|469
8T5H|1|v|C|470

Current chains

Chain v

16S

Nearby chains