HL_8T5H_099

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUCCGGCC

Length

9 nucleotides

Bulged bases

8T5H|1|v|C|1136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_099 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3574

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8T5H|1|v|G|1133
8T5H|1|v|G|1134
8T5H|1|v|U|1135
8T5H|1|v|C|1136
8T5H|1|v|C|1137
8T5H|1|v|G|1138
8T5H|1|v|G|1139
8T5H|1|v|C|1140
8T5H|1|v|C|1141

Current chains

Chain v

16S

Nearby chains

Chain h

30S ribosomal protein S9