HL_8T5H_100

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

8T5H|1|v|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_100 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.289

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8T5H|1|v|U|1165
8T5H|1|v|G|1166
8T5H|1|v|A|1167
8T5H|1|v|U|1168
8T5H|1|v|A|1169
8T5H|1|v|A|1170
8T5H|1|v|A|1171

Current chains

Chain v

16S

Nearby chains