HL_8T76_002

3D structure

PDB id

8T76 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 3 bp R-loop

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CUAG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T76_002 not in the Motif Atlas

Geometric match to HL_7RQB_039

Geometric discrepancy: 0.1069

The information below is about HL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38927.5

Basepair signature

cWW-F

Number of instances in this motif group

32

Unit IDs

8T76|1|B|C|55
8T76|1|B|U|56
8T76|1|B|A|57
8T76|1|B|G|58

Current chains

Chain B

gRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1