HL_8T8B_181

3D structure

PDB id

8T8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

8T8B|1|2a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T8B_181 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0646

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8T8B|1|2a|G|259
8T8B|1|2a|G|260
8T8B|1|2a|U|261
8T8B|1|2a|A|262
8T8B|1|2a|A|263
8T8B|1|2a|U|264
8T8B|1|2a|G|265
8T8B|1|2a|G|266
8T8B|1|2a|C|267

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2q

30S ribosomal protein S17

Chain 2t

30S ribosomal protein S20