HL_8TOZ_001

3D structure

PDB id

8TOZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Class III PreQ1 riboswitch double mutant U8C/A85G

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAACCUAGGAUUUUAGG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8TOZ_001 not in the Motif Atlas

Geometric match to HL_6XKO_001

Geometric discrepancy: 0.1046

The information below is about HL_6XKO_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99324.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8TOZ|1|A|C|4
8TOZ|1|A|A|5
8TOZ|1|A|A|6
8TOZ|1|A|C|7
8TOZ|1|A|C|8
8TOZ|1|A|U|9
8TOZ|1|A|A|10
8TOZ|1|A|G|11
8TOZ|1|A|G|12
8TOZ|1|A|A|13
8TOZ|1|A|U|14
8TOZ|1|A|U|15
8TOZ|1|A|U|16
8TOZ|1|A|U|17
8TOZ|1|A|A|18
8TOZ|1|A|G|19
8TOZ|1|A|G|20

Current chains

Chain A

Class-III preQ1 riboswitch

Nearby chains