Motif HL_99324.1 Version HL_99324.1 of this group appears in releases 3.95 to 4.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8CRE_209 | 8CRE | 0.0000 | 0 | CM | SSU rRNA | U | 813 | A | 814 | U | 815 | U | 816 | U | 817 | U | 818 | G | 819 | U | 820 | U | 821 | G | 822 | G | 823 | U | 824 | U | 825 | U | 826 | C | 827 | U | 828 | A | 829 | cWW | |
| 2 | HL_6XKO_001 | 6XKO | 0.6817 | 0 | A | PreQ1-III riboswitch | C | 4 | A | 5 | A | 6 | C | 7 | U | 8 | U | 9 | A | 10 | G | 11 | G | 12 | A | 13 | U | 14 | U | 15 | U | 16 | U | 17 | A | 18 | G | 19 | G | 20 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUUUUGUUGGUUUCUA | 1 |
| CAACUUAGGAUUUUAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUUUGUUGGUUUCU | 1 |
| AACUUAGGAUUUUAG | 1 |
Release history
| Release | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.68 | Avg 0.34 | Max 0.68
Coloring options: